Ceze, L., Nivala, J. & Strauss, Okay. Molecular digital information storage utilizing DNA. Nat. Rev. Genet. 20, 456–466 (2019).
Copeland, B. J. in The Stanford Encyclopedia of Philosophy Winter 2020 edn (ed. Zalta, E. N.) (Stanford Univ., 2020).
Ceruzzi, P. E. A historical past of contemporary computing. Selection Rev. On-line 36, 36-4531–36-4531 (1999).
Goldman, N. et al. In direction of sensible, high-capacity, low-maintenance data storage in synthesized DNA. Nature 494, 77–80 (2013).
Church, G. M., Gao, Y. & Kosuri, S. Subsequent-generation digital data storage in DNA. Science 337, 1628 (2012).
Grass, R. N., Heckel, R., Puddu, M., Paunescu, D. & Stark, W. J. Sturdy chemical preservation of digital data on DNA in silica with error-correcting codes. Angew. Chem. Int. Ed. 54, 2552–2555 (2015).
Blawat, M. et al. Ahead error correction for DNA information storage. Procedia Comput. Sci. 80, 1011–1022.
Erlich, Y. & Zielinski, D. DNA Fountain permits a strong and environment friendly storage structure. Science 355, 950–954 (2017).
Lee, H. H., Kalhor, R., Goela, N., Bolot, J. & Church, G. M. Terminator-free template-independent enzymatic DNA synthesis for digital data storage. Nat. Commun. 10, 2383 (2019).
Palluk, S. et al. De novo DNA synthesis utilizing polymerase-nucleotide conjugates. Nat. Biotechnol. 36, 645–650 (2018).
Lopez, R. et al. DNA meeting for nanopore information storage readout. Nat. Commun. 10, 2933 (2019).
Mao, C., LaBean, T. H., Reif, J. H. & Seeman, N. C. Logical computation utilizing algorithmic self-assembly of DNA triple-crossover molecules. Nature 407, 493–496 (2000).
Adleman, L. M. Molecular computation of options to combinatorial issues. Science 266, 1021–1024 (1994).
Organick, L. et al. Random entry in large-scale DNA information storage. Nat. Biotechnol. 36, 242–248 (2018).
Tabatabaei Yazdi, S. M. H., Yuan, Y., Ma, J., Zhao, H. & Milenkovic, O. A rewritable, random-access DNA-based storage system. Sci. Rep. 5, 1–10 (2015).
Yazdi, S. M. H. T., Gabrys, R. & Milenkovic, O. Moveable and error-free DNA-based information storage. Sci. Rep. https://doi.org/10.1038/s41598-017-05188-1 (2017).
Bornholt, J. et al. A DNA-based archival storage system. In Proc. twenty first Worldwide Convention on Architectural Help for Programming Languages and Working Techniques—ASPLOS ’16 (eds Conte, T. & Zhou, Y.) 637–649 (ACM Press, 2016).
Bögels, B. W. A. et al. DNA storage in thermoresponsive microcapsules for repeated random multiplexed information entry. Nat. Nanotechnol. 18, 912–921 (2023).
Benenson, Y. et al. Programmable and autonomous computing machine product of biomolecules. Nature 414, 430–434 (2001).
Bell, N. A. W. & Keyser, U. F. Digitally encoded DNA nanostructures for multiplexed, single-molecule protein sensing with nanopores. Nat. Nanotechnol. 11, 645–651 (2016).
Dickinson, G. D. et al. An alternate strategy to nucleic acid reminiscence. Nat. Commun. 12, 2371 (2021).
Chen, Okay. et al. Digital information storage utilizing DNA nanostructures and solid-state nanopores. Nano Lett. 19, 1210–1215 (2019).
Chen, Okay., Zhu, J., Bošković, F. & Keyser, U. F. Nanopore-based DNA arduous drives for rewritable and safe information storage. Nano Lett. 20, 3754–3760 (2020).
Zhang, Y. et al. DNA origami cryptography for safe communication. Nat. Commun. 10, 5469 (2019).
Numajiri, Okay., Kimura, M., Kuzuya, A. & Komiyama, M. Stepwise and reversible nanopatterning of proteins on a DNA origami scaffold. Chem. Commun. 46, 5127 (2010).
Roh, S., Williams, A. H., Bang, R. S., Stoyanov, S. D. & Velev, O. D. Gentle dendritic microparticles with uncommon adhesion and structuring properties. Nat. Mater. 18, 1315–1320 (2019).
Williams, A. H. et al. Printable homocomposite hydrogels with synergistically bolstered molecular-colloidal networks. Nat. Commun. 12, 2834 (2021).
Bergenstråhle, M., Wohlert, J., Himmel, M. E. & Brady, J. W. Simulation research of the insolubility of cellulose. Carbohydr. Res. 345, 2060–2066 (2010).
Lindman, B., Medronho, B., Alves, L., Norgren, M. & Nordenskiöld, L. Hydrophobic interactions management the self-assembly of DNA and cellulose. Q. Rev. Biophys. 54, e3 (2021).
Bang, R. S., Roh, S., Williams, A. H., Stoyanov, S. D. & Velev, O. D. Fluid stream templating of polymeric mushy matter with numerous morphologies. Adv. Mater. 35, 2211438 (2023).
Ali, M. E. et al. in Reference Module in Supplies Science and Supplies Engineering (Elsevier, 2016); https://doi.org/10.1016/B978-0-12-803581-8.04075-3
Paul, A. & Bhattacharya, S. Chemistry and biology of DNA-binding small molecules. Curr. Sci. 102, 212–231 (2012).
Koch, J. et al. A DNA-of-things storage structure to create supplies with embedded reminiscence. Nat. Biotechnol. 38, 39–43 (2020).
Lin, Okay. N., Grandhi, T. S. P., Goklany, S. & Rege, Okay. Chemotherapeutic drug‐conjugated microbeads exhibit preferential binding to methylated plasmid DNA. Biotechnol. J. 13, 1700701 (2018).
Stetefeld, J., McKenna, S. A. & Patel, T. R. Dynamic mild scattering: a sensible information and purposes in biomedical sciences. Biophys. Rev. 8, 409–427 (2016).
Lin, Okay. N., Volkel, Okay., Tuck, J. M. & Keung, A. J. Dynamic and scalable DNA-based data storage. Nat. Commun. 11, 2981 (2020).
Fisher, S. et al. A scalable, absolutely automated course of for development of sequence-ready human exome focused seize libraries. Genome Biol. 12, R1 (2011).
DeAngelis, M. M., Wang, D. G. & Hawkins, T. L. Strong-phase reversible immobilization for the isolation of PCR merchandise. Nucleic Acids Res. 23, 4742–4743 (1995).
Chen, Y.-J. et al. Quantifying molecular bias in DNA information storage. Nat. Commun. 11, 3264 (2020).
Matange, Okay., Tuck, J. M. & Keung, A. J. DNA stability: a central design consideration for DNA information storage methods. Nat. Commun. 12, 1358 (2021).
Lauková, L., Konečná, B., Janovičová, Ľ., Vlková, B. & Celec, P. Deoxyribonucleases and their purposes in biomedicine. Biomolecules 10, 1036 (2020).
Robinson, P. Okay. Enzymes: rules and biotechnological purposes. Essays Biochem 59, 1–41 (2015).
Loenen, W. A. M., Dryden, D. T. F., Raleigh, E. A., Wilson, G. G. & Murray, N. E. Highlights of the DNA cutters: a brief historical past of the restriction enzymes. Nucleic Acids Res. 42, 3–19 (2014).
Allemand, J. F., Bensimon, D., Jullien, L., Bensimon, A. & Croquette, V. pH-dependent particular binding and brushing of DNA. Biophys. J. 73, 2064–2070 (1997).
Vandeventer, P. E. et al. Multiphasic DNA adsorption to silica surfaces beneath various buffer, pH, and ionic energy situations. J. Phys. Chem. B 116, 5661–5670 (2012).
Cai, J. & Zhang, L. Fast dissolution of cellulose in LiOH/urea and NaOH/urea aqueous options. Macromol. Biosci. 5, 539–548 (2005).
Jiménez-Ángeles, F. & Firoozabadi, A. Hydrophobic hydration and the impact of NaCl salt within the adsorption of hydrocarbons and surfactants on clathrate hydrates. ACS Cent. Sci. 4, 820–831 (2018).
Workman, R. E. et al. Nanopore native RNA sequencing of a human poly(A) transcriptome. Nat. Strategies 16, 1297–1305 (2019).
Soneson, C. et al. A complete examination of nanopore native RNA sequencing for characterization of advanced transcriptomes. Nat. Commun. 10, 3359 (2019).
Smith, M. A. et al. Molecular barcoding of native RNAs utilizing nanopore sequencing and deep studying. Genome Res. 30, 1345–1353 (2020).
Qiu, M. et al. RNA nanotechnology for laptop design and in vivo computation. Philos. Trans. R Soc. A 371, 20120310 (2013).
Faulhammer, D., Cukras, A. R., Lipton, R. J. & Landweber, L. F. Molecular computation: RNA options to chess issues. Proc. Natl Acad. Sci. USA 97, 1385–1389 (2000).
Takahashi, C. N., Nguyen, B. H., Strauss, Okay. & Ceze, L. Demonstration of end-to-end automation of DNA information storage. Sci. Rep. 9, 4998 (2019).
Newman, S. et al. Excessive density DNA information storage library through dehydration with digital microfluidic retrieval. Nat. Commun. 10, 1706 (2019).
Luo, Y. et al. Built-in microfluidic DNA storage platform with automated pattern dealing with and bodily information partitioning. Anal. Chem. 94, 13153–13162 (2022).
Gerasimova, Y. V. & Kolpashchikov, D. M. In direction of a DNA nanoprocessor: reusable tile‐built-in DNA circuits. Angew. Chem. 128, 10400–10403 (2016).
Guz, N. et al. Bioelectronic interface connecting reversible logic gates based mostly on enzyme and DNA reactions. ChemPhysChem 17, 2247–2255 (2016).
Polak, R. E. & Keung, A. J. A molecular evaluation of the sensible potential of DNA-based computation. Curr. Opin. Biotechnol. 81, 102940 (2023).
Yang, S. et al. DNA as a common chemical substrate for computing and information storage. Nat. Rev. Chem. 8, 179–194 (2024).
Cherry, Okay. M. & Qian, L. Scaling up molecular sample recognition with DNA-based winner-take-all neural networks. Nature 559, 370–376 (2018).
Schindelin, J. et al. Fiji: an open-source platform for biological-image evaluation. Nat. Strategies 9, 676–682 (2012).
Keung Lab. keung-lab/Lin-et-al-2024: v1.0.1. Zenodo https://doi.org/10.5281/zenodo.12169723 (2024).
Lin, Okay. & Keung, A. FASTQ information for: a primordial DNA retailer and compute engine. Zenodo https://doi.org/10.5281/zenodo.12192541 (2024).